While trolling through some Microsoft research projects recently I ran across two of particular interest in my current area - BioCoder, described below, and Chemistry for Word which I will cover in a later post. The BioCode concept applies programming constructs to the protocol definition process. The idea is interesting and worth exploring. The blurb below from the site summarizes it nicely and you can read more by downloading the package here.
BioCoder is a high-level programming language that enables standardization and automation of biology protocols. Our vision is to change the way that experimental methods are communicated: rather than publishing a written account of the protocols used, researchers will simply publish the code. The code can be automatically converted to human-readable steps for manual execution in the laboratory. When written as a computer program, biology protocols can be parameterized to facilitate reuse in different contexts. They can also be mapped automatically to the setup of a given laboratory, taking into account the equipment and reagents that are available.
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